Uncultivated Atopobium sp. UBA7774 genome recovere... - BioSample - NCBI

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Uncultivated Atopobium sp. UBA7774 genome recovered from SRX331741

Identifiers: BioSample: SAMN06453812; Sample name: Atopobium sp. UBA7774; SRA: SRS2033608

Organism: Atopobium sp. UBA7774
cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium; unclassified Atopobium

Package: Microbe; version 1.0

Attributes

collection date	not applicable
geographic location	USA: Wyoming
isolate	UBA7774
isolation source	Rumen fluid
metagenome source	gut metagenome
sample type	metagenomic assembly
subsource note	Genome binned from sequencing reads available in SRX331741 metagenome
assembly_method	CLC de novo assembler
assembly_method_version	4.4.1
completeness_estimated	78.70%
contamination_estimated	3.23%
environmental_sample	true
genome_coverage	29.98
mapping_method	BWA (BWA-MEM)
mapping_method_version	0.7.12-r1039
metagenomic	true
quality_assessment_method	CheckM
quality_assessment_method_version	1.0.6
value	This BioSample is a metagenomic assembly obtained from the gut metagenome reads: SRR948125.

Description: Uncultivated genome recovered from an assembly of the SRX331741 metagenome.

BioProject: PRJNA348753 metagenomes
Retrieve all samples from this project

Submission: University of Queensland, Donovan Parks; 2017-02-27

Accession:: SAMN06453812
ID:: 6453812

BioProject SRA Nucleotide

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Uncultivated Atopobium sp. UBA7774 genome recovered from SRX331741
Uncultivated Atopobium sp. UBA7774 genome recovered from SRX331741

biosample
BioSample links for Nucleotide (Select 1252357116) (1)
BioSample
shikimate 5-dehydrogenase [Lactobacillus plantarum JDM1]
shikimate 5-dehydrogenase [Lactobacillus plantarum JDM1]
gi|254557955|gnl|REF_MSJTU|JDM1_278 |YP_003064372.1|

Protein
PREDICTED: heparan sulfate glucosamine 3-O-sulfotransferase 6 [Poecilia reticula...
PREDICTED: heparan sulfate glucosamine 3-O-sulfotransferase 6 [Poecilia reticulata]
gi|658903414|ref|XP_008434459.1|

Protein

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