Uncultivated Methylobacter sp. UBA6701 genome reco... - BioSample - NCBI

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Uncultivated Methylobacter sp. UBA6701 genome recovered from SRX644735

Identifiers: BioSample: SAMN06454508; Sample name: Methylobacter sp. UBA6701; SRA: SRS2034386

Organism: Methylobacter sp. UBA6701
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter; unclassified Methylobacter

Package: Microbe; version 1.0

Attributes

collection date	not applicable
geographic location	USA: Lake Washington
isolate	UBA6701
isolation source	sediment
metagenome source	freshwater sediment metagenome
sample type	metagenomic assembly
subsource note	Genome binned from sequencing reads available in SRX644735 metagenome
assembly_method	CLC de novo assembler
assembly_method_version	4.4.1
completeness_estimated	87.05%
contamination_estimated	1.47%
environmental_sample	true
genome_coverage	32.39
mapping_method	BWA (BWA-MEM)
mapping_method_version	0.7.12-r1039
metagenomic	true
quality_assessment_method	CheckM
quality_assessment_method_version	1.0.6
value	This BioSample is a metagenomic assembly obtained from the freshwater sediment metagenome reads: SRR1505171.

Description: Uncultivated genome recovered from an assembly of the SRX644735 metagenome.

BioProject: PRJNA348753 metagenomes
Retrieve all samples from this project

Submission: University of Queensland, Donovan Parks; 2017-02-27

Accession:: SAMN06454508
ID:: 6454508

BioProject SRA Nucleotide

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BioSample links for Nucleotide (Select 1251775224) (1)
BioSample
Uncultivated Methylobacter sp. UBA6701 genome recovered from SRX644735
Uncultivated Methylobacter sp. UBA6701 genome recovered from SRX644735

biosample
PREDICTED: Homo sapiens Rho guanine nucleotide exchange factor 40 (ARHGEF40), tr...
PREDICTED: Homo sapiens Rho guanine nucleotide exchange factor 40 (ARHGEF40), transcript variant X5, mRNA
gi|2462540844|ref|XM_054376352.1|

Nucleotide
PREDICTED: Homo sapiens Rho guanine nucleotide exchange factor 40 (ARHGEF40), tr...
PREDICTED: Homo sapiens Rho guanine nucleotide exchange factor 40 (ARHGEF40), transcript variant X4, mRNA
gi|2462540842|ref|XM_054376351.1|

Nucleotide

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