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Uncultivated Pseudomonas nitroreducens UBA6825 genome recovered from SRX822920

Identifiers
BioSample: SAMN06455441; Sample name: Pseudomonas nitroreducens UBA6825; SRA: SRS2039272
Organism
Pseudomonas nitroreducens
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas nitroreducens/multiresinivorans group
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationUSA:New York City
isolateUBA6825
isolation sourceNew York City MTA subway
metagenome sourceterrestrial metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX822920 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated91.23%
contamination_estimated3.52%
environmental_sampletrue
genome_coverage144.5
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the terrestrial metagenome reads: SRR1749537.
Description

Uncultivated genome recovered from an assembly of the SRX822920 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06455441
ID:
6455441

BioProject SRA Nucleotide

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