U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

Uncultivated Sphingobium sp. UBA5915 genome recovered from SRX864952

Identifiers
BioSample: SAMN06451017; Sample name: Sphingobium sp. UBA5915; SRA: SRS2035507
Organism
Sphingobium sp. UBA5915
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium; unclassified Sphingobium
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationBrazil: Amazon River
isolateUBA5915
isolation sourcewater
metagenome sourceaquatic metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX864952 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated96.48%
contamination_estimated0.71%
environmental_sampletrue
genome_coverage29.21
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the aquatic metagenome reads: SRR1786279.
Description

Uncultivated genome recovered from an assembly of the SRX864952 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06451017
ID:
6451017

BioProject SRA Nucleotide

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > DNA & RNA > BioSample
Support Center