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Uncultivated Ruminococcaceae bacterium UBA5434 genome recovered from SRX691281

Identifiers
BioSample: SAMN06456061; Sample name: Ruminococcaceae bacterium UBA5434; SRA: SRS2035948
Organism
Ruminococcaceae bacterium UBA5434
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; unclassified Oscillospiraceae
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationChina: Chengdu
isolateUBA5434
isolation sourcemud
metagenome sourcefermentation metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX691281 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated83.53%
contamination_estimated2.76%
environmental_sampletrue
genome_coverage49.84
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the fermentation metagenome reads: SRR1562006.
Description

Uncultivated genome recovered from an assembly of the SRX691281 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06456061
ID:
6456061

BioProject SRA Nucleotide

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