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Uncultivated Atopobium sp. UBA5378 genome recovered from SRX691282

Identifiers
BioSample: SAMN06451573; Sample name: Atopobium sp. UBA5378; SRA: SRS2035983
Organism
Atopobium sp. UBA5378
cellular organisms; Bacteria; Bacillati; Actinomycetota; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium; unclassified Atopobium
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationChina: Chengdu
isolateUBA5378
isolation sourcemud
metagenome sourcefermentation metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX691282 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated65.32%
contamination_estimated0.00%
environmental_sampletrue
genome_coverage38.31
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the fermentation metagenome reads: SRR1562007.
Description

Uncultivated genome recovered from an assembly of the SRX691282 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06451573
ID:
6451573

BioProject SRA Nucleotide

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