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Greater amberjack

Identifiers
BioSample: SAMD00083043
Organism
Seriola dumerili (greater amberjack)
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Osteoglossocephalai; Clupeocephala; Euteleosteomorpha; Neoteleostei; Eurypterygia; Ctenosquamata; Acanthomorphata; Euacanthomorphacea; Percomorphaceae; Carangaria; Carangiformes; Carangidae; Seriola
Package
MIGS: eukaryote; version 6.0
Attributes
sample nameSdu_G_001
agethree years old
biomaterial providerKomame station, National Research Institute of Aquaculture
collection date2014-06
broad-scale environmental contextocean
local-scale environmental contextbay
environmental mediumwater
estimated size650000000bp
geographic locationJapan:Kochi, Yawata-gun
isolation and growth conditionmissing
latitude and longitude32.47 N 132.41 E
number of replicons24
ploidydiploid
project nameGreater amberjack (Seriola dumerili) whole genome de novo sequence
propagationsexual
sexmale
tissuesperm
cultivarmissing
ecotypemissing
isolatemissing
strainmissing
locus_tag_prefixAmj
Description

Greater amberjack is widely distributed in tropical and temperate waters of whole world and important aquaculture fish in Japan. For functional gene identification for biological traits and breeding yellowtail by marker-assisted selection (MAS) or gene-assisted selection (GAS), we carried out whole genome de novo sequencing using Hiseq2500 and PacBio RSII to constructed genome reference sequences of greater amberjack and map parallel re-sequence of greater amberjack on the reference sequence for SNP detection. We gaihered sperms from one healthy three-yera-old male breeded in marine fish pen.

Keywords: GSC:MIxS;MIGS:6.0

BioProjects
PRJNA412910 Seriola dumerili
Retrieve all samples from this project

PRJDB5856 Seriola dumerili
Retrieve all samples from this project

Submission
Genomic breeding group, Research Center for Aquatic Breeding, National Research Institute of aquaculture, FRA; 2017-08-05
Accession:
SAMD00083043
ID:
7452665

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