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Uncultivated Porphyromonadaceae bacterium UBA3400 genome recovered from ERX166945

Identifiers
BioSample: SAMN06453224; Sample name: Porphyromonadaceae bacterium UBA3400; SRA: SRS2030427
Organism
Porphyromonadaceae bacterium UBA3400
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationNULL
isolateUBA3400
isolation sourcedigestive tract (UBERON:0001555); intestine (UBERON:0000160)
metagenome sourcemouse gut metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in ERX166945 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated94.23%
contamination_estimated0.75%
environmental_sampletrue
genome_coverage22.72
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the mouse gut metagenome reads: ERR192256.
Description

Uncultivated genome recovered from an assembly of the ERX166945 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06453224
ID:
6453224

BioProject SRA Nucleotide

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