Uncultivated Akkermansiaceae bacterium UBA2367 gen... - BioSample - NCBI

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Uncultivated Akkermansiaceae bacterium UBA2367 genome recovered from SRX646157

Identifiers: BioSample: SAMN06451526; Sample name: Akkermansiaceae bacterium UBA2367; SRA: SRS2034483

Organism: Akkermansiaceae bacterium UBA2367
cellular organisms; Bacteria; PVC group; Verrucomicrobiota; Verrucomicrobiia; Verrucomicrobiales; Akkermansiaceae; unclassified Akkermansiaceae

Package: Microbe; version 1.0

Attributes

collection date	not applicable
geographic location	Australia: Brisbane, Thorneside Wastewater Treatment Plant
isolate	UBA2367
isolation source	activated sludge
metagenome source	bioreactor sludge metagenome
sample type	metagenomic assembly
subsource note	Genome binned from sequencing reads available in SRX646157 metagenome
assembly_method	CLC de novo assembler
assembly_method_version	4.4.1
completeness_estimated	96.60%
contamination_estimated	1.36%
environmental_sample	true
genome_coverage	68.98
mapping_method	BWA (BWA-MEM)
mapping_method_version	0.7.12-r1039
metagenomic	true
quality_assessment_method	CheckM
quality_assessment_method_version	1.0.6
value	This BioSample is a metagenomic assembly obtained from the bioreactor sludge metagenome reads: SRR1506987.

Description: Uncultivated genome recovered from an assembly of the SRX646157 metagenome.

BioProject: PRJNA348753 metagenomes
Retrieve all samples from this project

Submission: University of Queensland, Donovan Parks; 2017-02-27

Accession:: SAMN06451526
ID:: 6451526

BioProject SRA Nucleotide

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Uncultivated Akkermansiaceae bacterium UBA2367 genome recovered from SRX646157
Uncultivated Akkermansiaceae bacterium UBA2367 genome recovered from SRX646157

biosample
BioSample links for Nucleotide (Select 1245715170) (1)
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MAG TPA_asm: Clostridiales bacterium UBA5274, whole genome shotgun sequencing pr...
MAG TPA_asm: Clostridiales bacterium UBA5274, whole genome shotgun sequencing project
gi|1248843322|tpg|DHSY00000000.1|DH 00000

Nucleotide
Nucleotide Links for Protein (Select 490657115) (1000)
Nucleotide
Homo sapiens SCY1 like pseudokinase 1 (SCYL1), transcript variant 31, mRNA
Homo sapiens SCY1 like pseudokinase 1 (SCYL1), transcript variant 31, mRNA
gi|2613658531|ref|NM_001425206.1|

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