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Uncultivated Sphingobium yanoikuyae UBA2569 genome recovered from SRX822167

Identifiers
BioSample: SAMN06454545; Sample name: Sphingobium yanoikuyae UBA2569; SRA: SRS2038557
Organism
Sphingobium yanoikuyae
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationUSA:New York City
isolateUBA2569
isolation sourcemetal
metagenome sourceterrestrial metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX822167 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated98.46%
contamination_estimated0.97%
environmental_sampletrue
genome_coverage20.66
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the terrestrial metagenome reads: SRR1748783.
Description

Uncultivated genome recovered from an assembly of the SRX822167 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06454545
ID:
6454545

BioProject SRA Nucleotide

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