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Uncultivated Oblitimonas sp. UBA1679 genome recovered from SRX498680

Identifiers
BioSample: SAMN06454211; Sample name: Oblitimonas sp. UBA1679; SRA: SRS2033978
Organism
Oblitimonas sp. UBA1679
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Thiopseudomonas; unclassified Thiopseudomonas
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationGermany: Zoo of Hamburg
isolateUBA1679
isolation sourceFeces of three-weeks old elephant
metagenome sourcegut metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX498680 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated96.84%
contamination_estimated0.86%
environmental_sampletrue
genome_coverage1896.1
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the gut metagenome reads: SRR1201870.
Description

Uncultivated genome recovered from an assembly of the SRX498680 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06454211
ID:
6454211

BioProject SRA Nucleotide

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