Uncultivated Sulfitobacter sp. UBA1132 genome reco... - BioSample - NCBI

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Uncultivated Sulfitobacter sp. UBA1132 genome recovered from SRX1075081

Identifiers: BioSample: SAMN06457041; Sample name: Sulfitobacter sp. UBA1132; SRA: SRS2032122

Organism: Sulfitobacter sp. UBA1132
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Sulfitobacter; unclassified Sulfitobacter

Package: Microbe; version 1.0

Attributes

collection date	not applicable
geographic location	Atlantic Ocean:Mid Cayman Rise
isolate	UBA1132
isolation source	Beebe hydrothermal vent plume at at depth of 4900m
metagenome source	hydrothermal vent metagenome
sample type	metagenomic assembly
subsource note	Genome binned from sequencing reads available in SRX1075081 metagenome
assembly_method	CLC de novo assembler
assembly_method_version	4.4.1
completeness_estimated	98.11%
contamination_estimated	0.48%
environmental_sample	true
genome_coverage	75.84
mapping_method	BWA (BWA-MEM)
mapping_method_version	0.7.12-r1039
metagenomic	true
quality_assessment_method	CheckM
quality_assessment_method_version	1.0.6
value	This BioSample is a metagenomic assembly obtained from the hydrothermal vent metagenome reads: SRR2080392.

Description: Uncultivated genome recovered from an assembly of the SRX1075081 metagenome.

BioProject: PRJNA348753 metagenomes
Retrieve all samples from this project

Submission: University of Queensland, Donovan Parks; 2017-02-27

Accession:: SAMN06457041
ID:: 6457041

BioProject SRA Nucleotide

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Uncultivated Sulfitobacter sp. UBA1132 genome recovered from SRX1075081
Uncultivated Sulfitobacter sp. UBA1132 genome recovered from SRX1075081

biosample
BioSample links for Nucleotide (Select 1243627418) (1)
BioSample
Taxonomy Links for BioSample (Select 6457097) (1)
Taxonomy
PREDICTED: Homo sapiens solute carrier family 6 member 16 (SLC6A16), transcript ...
PREDICTED: Homo sapiens solute carrier family 6 member 16 (SLC6A16), transcript variant X5, mRNA
gi|2462564833|ref|XM_054320739.1|

Nucleotide
PREDICTED: Homo sapiens solute carrier family 6 member 16 (SLC6A16), transcript ...
PREDICTED: Homo sapiens solute carrier family 6 member 16 (SLC6A16), transcript variant X10, mRNA
gi|2462564843|ref|XM_054320744.1|

Nucleotide

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