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Animal sample from Alligator mississippiensis (American alligator) for VGP reference genome, rAllMis1

Identifiers
BioSample: SAMN37045233; Sample name: Animal sample from Alligator mississippiensis (American alligator) for VGP reference genome, rAllMis1; SRA: SRS22289852
Organism
Alligator mississippiensis (American alligator)
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Sauropsida; Sauria; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Package
Model organism or animal; version 1.0
Attributes
isolaterAllMis1
age2 years
development stageadult
collection date2020-11
geographic locationUSA: Delacriox, Louisiana
sexfemale
tissueblood
biomaterial providerBrian Crother: Southeastern Louisiana University
collected byChristopher Murray
latitude and longitude29.7616 N 89.7909 W
storage conditions-80oC
treatmentethanol
State of Louisiana Permit0368347797
Description

The American alligator (Alligator mississippiensis) is a large crocodilian reptile native to the Southeastern United States. It is one of the two extant species in the genus Alligator, the other being the Chinese alligator. This sample is from a female collected by Christopher Murray, coordinated by Brian Crother at Southeastern Louisiana University, to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP). Sequencing and genome assembly were conducted at the Vertebrate Genomes Lab (VGL) at the Rockefeller University, led by Olivier Fedrigo and Erich D. Jarvis. The original sample was thought to be Eastern musk turtle (Sternotherus odoratus), but sequencing determined it to be an Alligator sample shipped with it.

BioProjects
PRJNA1145950
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PRJNA1014489 Alligator mississippiensis isolate:rAllMis1
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PRJNA1006701 Alligator mississippiensis isolate:rAllMis1
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PRJNA1006700 Alligator mississippiensis isolate:rAllMis1
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Submission
G10K, Erich Jarvis; 2023-08-18
Accession:
SAMN37045233
ID:
37045233

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