Metagenome-Assembled Genome (MAG)

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Result Filters

Organism: uncultured Porphyromonas sp.
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas; environmental samples

Attributes

collection date	not provided
broad-scale environmental context	human-associated habitat
local-scale environmental context	human gut
environmental medium	faeces
geographic location	Spain
investigation type	metagenome-assembled genome
isolation source	human gut
project name	Human gut MAGs
sample name	ERR414468-bin.24
ENA first public	2021-01-22
ENA last update	2021-01-21
ENA-CHECKLIST	ERC000047
External Id	SAMEA7847811
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2021-01-22T04:11:13Z
INSDC last update	2021-01-21T23:13:22Z
INSDC status	public
Submitter Id	ERR414468-bin.24
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	spades_v3.11.1
binning parameters	default
binning software	MetaWRAP v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	96.90
completeness software	CheckM v1.0.11
contamination score	0.71
geographic location (latitude)	not provided
geographic location (longitude)	not provided
metagenomic source	human gut metagenome
sample derived from	ERS396508
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a MAG from the metagenomic run ERR414468

BioProject: PRJEB37358 Uncultured novel prokaryotic genomes associated with metabolic diseases such as T2D and T2D-related comorbidities
Retrieve all samples from this project

BioSample for Assembly (Select 9226161) (1)
BioSample
Metagenome-Assembled Genome (MAG)
Metagenome-Assembled Genome (MAG)

biosample
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit...
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD [uncultured Porphyromonas sp.]
gi|2527026269|ref|WP_288202301.1|

Protein
hypothetical protein [uncultured Porphyromonas sp.]
hypothetical protein [uncultured Porphyromonas sp.]
gi|2527026276|ref|WP_288202308.1|

Protein
Homo sapiens heterogeneous nuclear ribonucleoprotein H1 (HNRNPH1), transcript va...
Homo sapiens heterogeneous nuclear ribonucleoprotein H1 (HNRNPH1), transcript variant 23, mRNA
gi|1677530360|ref|NM_001364244.2|

Nucleotide