AG-470-M04

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Result Filters

Organism: uncultured Pelagibacteraceae bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Candidatus Pelagibacterales; Candidatus Pelagibacteraceae; environmental samples

Attributes

WGA amplification approach	mda based
collection date	2011-06-20
broad-scale environmental context	marine
local-scale environmental context	marine layer
environmental medium	marine photic zone
investigation type	single amplified genome
isolation source	marine water
project name	Harnessing the complexity of the marine microbiome through single cell genomics
sample name	AG-470-M04
ENA-CHECKLIST	ERC000048
ENA-FIRST-PUBLIC	2019-10-26T04:04:54Z
ENA-LAST-UPDATE	2019-10-14T05:18:10Z
External Id	SAMEA6079451
INSDC center name	WOODS HOLE OCEANOGRAPHIC INSTITUTION
INSDC first public	2019-10-26T04:04:54Z
INSDC last update	2019-10-14T05:18:10Z
INSDC status	public
Submitter Id	AG-470-M04
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes;3,9.0; kmer set 21, 33, 55
completeness score	77
completeness software	checkM
contamination score	0
geographic location (latitude)	-32.5
geographic location (longitude)	-154
metagenomic source	marine metagenome
sample derived from	ERS3555735
scientific_name	uncultured Pelagibacteraceae bacterium
sequencing method	Illumina
single cell or viral particle lysis approach	chemical
sorting technology	flow cytometric cell sorting
taxonomic identity marker	16S rRNA gene