| broad-scale environmental context | Human reproductive system |
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| collection date | 2008-01-01 |
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| environmental medium | Vagina |
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| geographic location | USA |
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| investigation type | metagenome-assembled genome |
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| isolation source | vaginal metagenome |
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| project name | The overarching goal of the VMRC is to identify correlates of stability and resilience in the vaginal microbiota and leverage these features to devise a framework for an intervention to maintain/restore vaginal health. |
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| sample name | SRR17635612_bin.9_metaWRAP_v1.3_MAG |
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| ENA-CHECKLIST | ERC000047 |
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| ENA-FIRST-PUBLIC | 2022-11-02 |
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| ENA-LAST-UPDATE | 2022-11-02 |
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| External Id | SAMEA111539124 |
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| INSDC center alias | EMG |
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| INSDC center name | EMG |
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| INSDC first public | 2022-11-02T04:23:11Z |
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| INSDC last update | 2022-11-02T04:23:11Z |
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| INSDC status | public |
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| Submitter Id | SRR17635612_bin.9_metaWRAP_v1.3_MAG |
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| assembly quality | Many fragments with little to no review of assembly other than reporting of standard assembly statistics |
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| assembly software | metaSPAdes v3.15.3 |
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| binning parameters | MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. |
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| binning software | metaWRAP v1.3 |
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| broker name | EMG broker account, EMBL-EBI |
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| completeness score | 99.11 |
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| completeness software | CheckM |
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| contamination score | 0.81 |
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| geographic location (latitude) | 39.2904 |
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| geographic location (longitude) | -76.6122 |
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| local environmental context | Vagina |
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| metagenomic source | vaginal metagenome |
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| sample derived from | SAMN25037712 |
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| sequencing method | Illumina HiSeq 4000 |
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| taxonomic classification | The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__ |
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| taxonomic identity marker | multi-marker approach |
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