Metagenome-assembled genome: SRR17254981_bin.4_met... - BioSample

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Metagenome-assembled genome: SRR17254981_bin.4_metawrap_v1.3.0_MAG

Identifiers: BioSample: SAMEA111342747; SRA: ERS13440305

Organism: uncultured Actinotalea sp.
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Cellulomonadaceae; Actinotalea; environmental samples

Attributes

broad-scale environmental context	plant
collection date	2019-04-20
environmental medium	rhizosphere
geographic location	Netherlands
investigation type	metagenome-assembled genome
isolation source	rhizosphere metagenome
project name	Here, taxonomic and (meta)genomic features of the rhizosphere microbiome were mapped as quantitative traits of a tomato recombinant inbred line population. This is the metagenomic part of the project (the first part (amplicon sequences) is stored under the BioProject PRJNA787039).
sample name	SRR17254981_bin.4_metawrap_v1.3.0_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-09-09
ENA-LAST-UPDATE	2022-09-09
External Id	SAMEA111342747
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2022-09-09T12:18:05Z
INSDC last update	2022-09-09T12:18:05Z
INSDC status	public
Submitter Id	SRR17254981_bin.4_metawrap_v1.3.0_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	metawrap v1.3.0
broker name	EMG broker account, EMBL-EBI
completeness score	93.2
completeness software	CheckM
contamination score	1.25
geographic location (latitude)	51.98
geographic location (longitude)	5.67
local environmental context	tomato
metagenomic source	rhizosphere metagenome
sample derived from	SAMN24114792
sequencing method	Illumina HiSeq 4000
taxonomic classification	The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Actinobacteria;c__Actinobacteria;o__Micrococcales;f__Cellulomonadaceae;g__Actinotalea;s__
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR17254981 of study SRP351203.