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Procaryotic genome sequencing

Identifiers
BioSample: SAMEA3906800; SRA: ERS1093934
Organism
uncultured Sphingopyxis sp.
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis; environmental samples
Attributes
isolateUC10
isolation sourceThis genome was reconstructed from an aerobic pyrene degrading enrichment culture grown from soil-compost microcosms, as described in Adam I.K. et al., under review. An uncontaminated and unfertilized agricultural soil (Ap horizon of a Haplic Chernozem) of the Static Fertilization Experiment Bad Lauchstädt (Germany) was supplemented with mature compost (Bio-Komp SAS Gmbh, Weizenfels, Germany) for biostimulation; the compost consisted of a mixture of vegetable and animal organic waste. Two stable enrichment cultures (UC1 and UC10) capable of total pyrene (spiked at a concentration of 100 mg/L) mineralization were obtained from the microscosm and shotgun sequenced (see Adam I.K. et al., under review 2016).
sample nameSPPYR_PRJEB13037
ENA first public2017-05-14
ENA last update2016-05-17
ENA-CHECKLISTERC000011
External IdSAMEA3906800
INSDC center aliasGenoscope CEA
INSDC center nameGenoscope CEA
INSDC first public2017-05-14T17:02:09Z
INSDC last update2016-05-17T12:36:12Z
INSDC statuspublic
Submitter IdSPPYR_PRJEB13037
BioProject
PRJEB13037 Sphingopyxis pyrene degrading H
Retrieve all samples from this project

Submission
EBI; 2017-05-15
Accession:
SAMEA3906800
ID:
7124538

BioProject Nucleotide

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