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Animal sample from Latimeria chalumnae (African coelacanth) for VGP reference genome, fLatCha1

Identifiers
BioSample: SAMN39710040; Sample name: Animal sample from Latimeria chalumnae (African coelacanth) for VGP reference genome, fLatCha1; SRA: SRS22162627
Organism
Latimeria chalumnae (coelacanth)
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Coelacanthimorpha; Coelacanthiformes; Coelacanthidae; Latimeria
Package
Model organism or animal; version 1.0
Attributes
isolatefLatCha1
development stageadult
collection date2003
geographic locationComoros: Grande Comore Island, Africa
sexfemale
tissueblood
biomaterial providerUniversity of California, Merced: Chris Amemiya
collected byAhamada Said
latitude and longitude11.583333 S 43.333333 E
storage conditions-80oC
treatment1% agarose blocks in 0.5 M EDTA
Description

The African coelacanth (Latimeria chalumnae) is a lobe-finned fish or crossopterygian, one of two extant species of coelacanth, a rare order of vertebrates more closely related to lungfish and tetrapods than to the common ray-finned fishes. The African coelacanth was believed to have been extinct over 65 million years ago, but was rediscovered off the coast of South Africa in 1938. (from Wikipedia and NOAA fisheries entries). This sample of an individual found on the Comoros Islands was procured by Ahamada Said and Chris Amemiya, and used to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP). Sequencing and genome assembly were conducted at the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Olivier Fedrigo, Giulio Formenti, and Jennifer Balacco.

BioProjects
PRJNA1141629
Retrieve all samples from this project

PRJNA1100969 Latimeria chalumnae isolate:fLatCha1
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PRJNA1072168 Latimeria chalumnae isolate:fLatCha1
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PRJNA1072167 Latimeria chalumnae isolate:fLatCha1
Retrieve all samples from this project

Submission
G10K, Erich Jarvis; 2024-01-31
Accession:
SAMN39710040
ID:
39710040

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