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Animal sample from Porphyrio hochstetteri (takahe) for VGP reference genome, bPorHoc1

Identifiers
BioSample: SAMN22550412; Sample name: Animal sample from Porphyrio hochstetteri (takahe) for VGP reference genome, bPorHoc1; SRA: SRS18622764
Organism
Porphyrio hochstetteri (South Island takahe)
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Sauropsida; Sauria; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Gruiformes; Rallidae; Porphyrio
Package
Model organism or animal; version 1.0
Attributes
isolatebPorHoc1
development stagejuvenile
sexfemale
tissueblood
biomaterial providerBurwood Takahe Breeding Centre, New Zealand
birth locationBurwood Takahe Breeding Centre, New Zealand
collected byGlen Greaves
collection date2020-02-13
geographic locationNew Zealand: Burwood
latitude and longitude43.499998 S 172.6999972 E
storage conditions-80oC
treatment99% ethanol
Description

The takahe (Porphyrio hochstetteri) is a flightless bird indigenous to New Zealand, and the largest living member of the rail family. Due to over hunting, they were once thought extinct by the late1890s, until 50 years later a small isolated population was found. The is now an active breeding program for their conservation. This juvenile female is from trio of samples (parents) breed and collected to create a high-quality reference genome for both maternal and paternal haplotypes. The juvenile was bred in captivity. Sample collection was conducted by Glen Greaves, in a projected coordinated and supported by Lara Urban, Andrew Digby, Daryl Eason, Deidre Vercoe, and Takahe Recovery Programme. Blood from the female was used to create high-quality reference genome assemblies of each haplotype. Genome sequencing and assembly was coordinated by Erich D. Jarvis and Olivier Fedrigo at the Rockefeller University Vertebrate Genome Lab, and as part of the Vertebrate Genomes Project (VGP) and for conservation research.

BioProjects
PRJNA1005968
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PRJNA774332 Porphyrio hochstetteri isolate:bPorHoc1
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PRJNA774331 Porphyrio hochstetteri isolate:bPorHoc1
Retrieve all samples from this project

Submission
G10K, Erich Jarvis; 2021-10-24
Accession:
SAMN22550412
ID:
22550412

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