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Oryx dammah Genome sequencing and assembly

Identifiers
BioSample: SAMN14518290; Sample name: SHO_SB20612; SRA: SRS6466860
Organism
Oryx dammah (scimitar-horned oryx)
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Hippotraginae; Oryx
Package
Model organism or animal; version 1.0
Attributes
isolateSB20612
development stageAdult
sexmale
tissueLiver
biomaterial providerSmithsonian's National Zoological Park and Conservation Biology Institute
geographic locationUSA: Front Royal, Virginia
sample typeTissue sample
stud book number20612
Description

The scimitar-horned oryx (Oryx dammah) is a North African antelope that has been extinct in the wild since the early 1980s and is the focus of a large-scale and long-term reintroduction project. To enable the selection of suitable founder individuals, facilitate post-release monitoring and improve captive breeding management, comprehensive genomic resources are required. We used 10X Chromium sequencing together with Hi-C contact mapping to develop a chromosomal-level genome assembly for the species. The resulting assembly contained 29 chromosomes with a scaffold N50 of 100.4 Mb.

BioProjects
PRJNA694191 Oryx dammah isolate:SB20612
Retrieve all samples from this project

PRJNA622505 Oryx dammah isolate:SB20612
Retrieve all samples from this project

Submission
Smithsonian Conservation Biology Institute, Klaus-Peter Koepfli; 2020-04-01
Accession:
SAMN14518290
ID:
14518290

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