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Pedosphaera-Tous-C6FEB

Identifiers
BioSample: SAMN06820754; Sample name: Pedosphaera-Tous-C6FEB
Organism
Pedosphaera sp. Tous-C6FEB
cellular organisms; Bacteria; PVC group; Verrucomicrobiota; Verrucomicrobiia; Limisphaerales; Limisphaerales incertae sedis; Pedosphaera; unclassified Pedosphaera
Package
Microbe; version 1.0
Attributes
broad-scale environmental contextFreshwater biome
isolation sourcefreshwater reservoir from 12m and 25m depth
depth12 m, 25 m
geographic locationSpain: Tous, Valencia
collection date2015-02-20
latitude and longitude39.14 N 0.65 W
isolateTous-C6FEB
metagenome sourcefreshwater metagenome
sample typemetagenomic assembly
environmental-sampleTRUE
metagenomicTRUE
noteThis BioSample is a metagenomic assembly obtained from the Reservoir Tous freshwater metagenome BioSamples: SAMN05736575, SAMN05736576
Description

The study aims to describe the microbial community of a freshwater reservoir using high throughput sequencing. The reservoir is called Tous and is located in the region of Valencia, Spain. Water was collected and filtered through a series of polycarbonate filters, a 20 micron prefilter, 5 micron (for large cells and eukaryotes) and 0.22 (for planktonic microbes). DNA was extracted from the 0.22 micron filter (small, planktonic fraction) filter to obtain genomic DNA of the microbial community. This Verrucomicrobia genome was reconstructed through the metagenomic assembled contigs of Tous 12m and 25m depth.

BioProjects
PRJNA342151 freshwater metagenome
Retrieve all samples from this project

PRJNA262859 Escherichia coli
Retrieve all samples from this project

Submission
None, Pedro Cabello-Yeves; 2017-04-24
Accession:
SAMN06820754
ID:
6820754

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