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Uncultivated Ruminococcus flavefaciens UBA3730 genome recovered from SRX290710

Identifiers
BioSample: SAMN06456597; Sample name: Ruminococcus flavefaciens UBA3730; SRA: SRS2032934
Organism
Ruminococcus flavefaciens
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationNULL
isolateUBA3730
isolation sourcelow methane producing sheep
metagenome sourcegut metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX290710 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated92.54%
contamination_estimated0.17%
environmental_sampletrue
genome_coverage23.44
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the gut metagenome reads: SRR873600.
Description

Uncultivated genome recovered from an assembly of the SRX290710 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06456597
ID:
6456597

BioProject SRA Nucleotide

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