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Uncultivated Pseudomonas sp. UBA1289 genome recovered from SRX822736

Identifiers
BioSample: SAMN06455757; Sample name: Pseudomonas sp. UBA1289; SRA: SRS2039147
Organism
Pseudomonas sp. UBA1289
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; unclassified Pseudomonas
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationUSA:New York City
isolateUBA1289
isolation sourcemetal
metagenome sourceterrestrial metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX822736 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated71.72%
contamination_estimated4.31%
environmental_sampletrue
genome_coverage12.25
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the terrestrial metagenome reads: SRR1749353.
Description

Uncultivated genome recovered from an assembly of the SRX822736 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06455757
ID:
6455757

BioProject SRA Nucleotide

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