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Uncultivated Pseudomonas sp. UBA2684 genome recovered from ERX556301

Identifiers
BioSample: SAMN06453897; Sample name: Pseudomonas sp. UBA2684; SRA: SRS2031624
Organism
Pseudomonas sp. UBA2684
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; unclassified Pseudomonas
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationmissing
isolateUBA2684
isolation sourcesaline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
metagenome sourcemarine metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in ERX556301 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated99.19%
contamination_estimated1.11%
environmental_sampletrue
genome_coverage55.03
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the marine metagenome reads: ERR599373.
Description

Uncultivated genome recovered from an assembly of the ERX556301 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06453897
ID:
6453897

BioProject SRA Nucleotide

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