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Uncultivated Ruminococcus flavefaciens UBA1210 genome recovered from SRX035182

Identifiers
BioSample: SAMN06453156; Sample name: Ruminococcus flavefaciens UBA1210; SRA: SRS2031890
Organism
Ruminococcus flavefaciens
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationNULL
isolateUBA1210
isolation sourceSwitch grass fiber attached community in cow rumen, 72 hour post incubation
metagenome sourcebovine gut metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX035182 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated83.27%
contamination_estimated0.00%
environmental_sampletrue
genome_coverage43.64
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the bovine gut metagenome reads: SRR094926,SRR094429,SRR094437.
Description

Uncultivated genome recovered from an assembly of the SRX035182 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06453156
ID:
6453156

BioProject SRA Nucleotide

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