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Uncultivated Rhodocyclaceae bacterium UBA5196 genome recovered from SRX559902

Identifiers
BioSample: SAMN06453051; Sample name: Rhodocyclaceae bacterium UBA5196; SRA: SRS2034243
Organism
Rhodocyclaceae bacterium UBA5196
cellular organisms; Bacteria; Pseudomonadota; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; unclassified Rhodocyclaceae
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationCanada: Fort McMurray, Alberta
isolateUBA5196
isolation sourcebiofilm
metagenome sourcehydrocarbon metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX559902 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated72.76%
contamination_estimated1.72%
environmental_sampletrue
genome_coverage68.1
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the hydrocarbon metagenome reads: SRR1313269,SRR1313278,SRR1313272,SRR1313274,SRR1313275,SRR1313277.
Description

Uncultivated genome recovered from an assembly of the SRX559902 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06453051
ID:
6453051

BioProject SRA Nucleotide

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