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Uncultivated Sphingobium xenophagum UBA2525 genome recovered from SRX1044543

Identifiers
BioSample: SAMN06452965; Sample name: Sphingobium xenophagum UBA2525; SRA: SRS2032025
Organism
Sphingobium xenophagum
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationAtlantic Ocean:Mid Cayman Rise
isolateUBA2525
isolation sourceocean water at depth 4950m
metagenome sourcehydrothermal vent metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX1044543 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated99.26%
contamination_estimated1.08%
environmental_sampletrue
genome_coverage294.15
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the hydrothermal vent metagenome reads: SRR2046221.
Description

Uncultivated genome recovered from an assembly of the SRX1044543 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06452965
ID:
6452965

BioProject SRA Nucleotide

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