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Synechococcus sp. Tous metagenomic assembly

Identifiers
BioSample: SAMN05915836; Sample name: Synechococcus sp. Tous
Organism
Synechococcus lacustris str. Tous
cellular organisms; Bacteria; Bacillati; Cyanobacteriota/Melainabacteria group; Cyanobacteriota; Cyanophyceae; Synechococcales; Synechococcaceae; Synechococcus; Synechococcus lacustris
Package
Microbe; version 1.0
Attributes
broad-scale environmental contextFreshwater biome
isolation sourcefreshwater reservoir from 12m and 25m depth
depth12m, 25m
geographic locationSpain: Tous (Valencia)
collection date2015-02-20
isolateTous
sample typemetagenomic assembly
latitude and longitude39.14 N 0.65 W
metagenome sourcefreshwater metagenome
strainTous
noteThis biosample is a metagenomic assembly obtained from the freshwater metagenome BioSamples SAMN05736575 and SAMN05736576 and from fosmids in BioSample SAMN06043546.
environmental-sampleTRUE
metagenomicTRUE
type-materialtype strain of Synechococcus lacustris
Description

The study aims to describe the microbial community of a freshwater reservoir using high throughput sequencing. The reservoir is called Tous and is located in the region of Valencia, Spain. Water was collected and filtered through a series of polycarbonate filters, a 20 micron prefilter, 5 micron (for large cells and eukaryotes) and 0.22 (for planktonic microbes). DNA was extracted from the 0.22 micron filter (small, planktonic fraction) filter to obtain genomic DNA of the microbial community. The genome of Synechococcus sp. Tous was reconstructed through the metagenomic assembled contigs of Tous 12m and 25m depth.

BioProject
PRJNA342151 freshwater metagenome
Retrieve all samples from this project

Submission
UMH-EGG; 2016-10-18
Accession:
SAMN05915836
ID:
5915836

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