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Pathogen: clinical or host-associated sample from Escherichia coli

Identifiers: BioSample: SAMN05806166; Sample name: 0000-0060-5831; SRA: SRS1712873

Organism: Escherichia coli
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia

Package: Pathogen: clinical or host-associated; version 1.0

Attributes

isolate	245
collected by	Brigham and Women's Hospital
collection date	2016
geographic location	USA:Boston
host	Homo sapiens
host disease	Missing
isolation source	urine
latitude and longitude	Missing
host age	68
host sex	female
host subject id	Ecoli-129

BioProject: PRJNA278886
Retrieve all samples from this project

Submission: Brigham & Women's Hospital, Xiaomin Zhao; 2016-09-22

Antibiogram
Antibiotic	Resistance phenotype	Measurement sign	Measurement	Measurement units	Laboratory typing method	Laboratory typing platform	Vendor	Laboratory typing method version or reagent	Testing standard
amikacin	susceptible	<=	2	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
amoxicillin-clavulanic acid	susceptible	==	4/2	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
ampicillin	resistant	>=	32	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
cefazolin	susceptible	==	2	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
cefepime	susceptible	<=	4	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
cefoxitin	susceptible	==	4	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
ceftazidime	resistant	>=	64	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
ceftriaxone	susceptible	<=	0.25	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
ciprofloxacin	susceptible	<=	0.5	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
ertapenem	susceptible	<=	1	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
gentamicin	susceptible	==	1	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
levofloxacin	susceptible	<=	16	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
piperacillin-tazobactam	susceptible	<=	4/4	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
tobramycin	susceptible	<=	1	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
tetracycline	resistant	>=	16	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
trimethoprim-sulfamethoxazole	resistant	>=	16/304	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
meropenem	susceptible	<=	0.25	mg/L	MIC	Vitek	Biomérieux	missing	CLSI

Accession:: SAMN05806166
ID:: 5806166

BioProject SRA Nucleotide

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