Pathogen: clinical or host-associated sample from ... - BioSample - NCBI

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Pathogen: clinical or host-associated sample from Escherichia coli

Identifiers: BioSample: SAMN05194389; Sample name: 0000-0058-7850; SRA: SRS1476331

Organism: Escherichia coli
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia

Package: Pathogen: clinical or host-associated; version 1.0

Attributes

latitude and longitude	Missing
isolation source	blood
collected by	Xiaomin Zhao
strain	219
geographic location	USA:Boston
collection date	2016
host disease	missing
host	Homo sapiens
Interagency Food Safety Analytics Collaboration (IFSAC) category	clinical/research, human
source type	human
host age	51
host sex	male
host subject id	Ecoli-116
ontological term	blood:UBERON_0000178

BioProject: PRJNA278886
Retrieve all samples from this project

Submission: Brigham & Women's Hospital, Xiaomin Zhao; 2016-06-01

Antibiogram
Antibiotic	Resistance phenotype	Measurement sign	Measurement	Measurement units	Laboratory typing method	Laboratory typing platform	Vendor	Laboratory typing method version or reagent	Testing standard
amikacin	resistant	>=	64	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
amoxicillin-clavulanic acid	resistant	>=	32/16	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
ampicillin	resistant	>=	32	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
cefazolin	resistant	>=	64	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
cefepime	resistant	>=	64	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
cefoxitin	resistant	>=	64	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
ceftazidime	resistant	>=	64	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
ceftriaxone	resistant	>=	64	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
ciprofloxacin	resistant	>=	4	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
gentamicin	resistant	>=	16	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
levofloxacin	resistant	>=	8	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
piperacillin-tazobactam	resistant	>=	128/4	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
tobramycin	resistant	>=	16	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
tetracycline	susceptible	==	4	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
trimethoprim-sulfamethoxazole	susceptible	<=	1/19	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
meropenem	resistant	>=	16	mg/L	MIC	Vitek	Biomérieux	missing	CLSI

Accession:: SAMN05194389
ID:: 5194389

BioProject SRA Nucleotide

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