U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Altered expression of genes in lncRNA-LBCS, hnRNPK and PTBP1 knockdown

Identifiers
BioSample: SAMN04545463; Sample name: UM-UC-3_Control, UM-UC-3_si-lncRNA-LBCS, UM-UC-3_si-hnRNPK, UM-UC-3_si-PTBP1; SRA: SRS1337533
Organism
Homo sapiens (human)
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo
Package
Human; version 1.0
Attributes
isolateBladder cancer cell line UM-UC-3 was transfected with the contol siRNA or lncRNA-LBCS, hnRNPK and PTBP1 siRNA for 48h, respectively. The RNA of the transfected cells was extracted and sequenced on an Illumina Hiseq 2500 platform and 100 bp paired-end reads were generated.
agenot available
biomaterial providerATCC
sexmale
tissuebladder cancer
cell lineUM-UC-3
Description

We identify a lncRNA which low expresses and regulates self-renewal of bladder cancer stem cell. So we named it lncRNA-LBCS (low expresses in bladder cancer stem cell). Further study finds that lncRNA-LBCS bind to hnRNPK and PTBP1. To investigate the genes regulated by these, we knockdown lncRNA-LBCS, hnRNPK and PTBP1 by siRNA, respectively, and perform high-throughput sequence. So we identify a series of genes regulated by lncRNA-LBCS, hnRNPK and PTBP1, respectively.

BioProject
PRJNA314922 Homo sapiens
Retrieve all samples from this project

Submission
Sun Yat-sen Memorial Hospital, Xu Chen; 2016-03-10
Accession:
SAMN04545463
ID:
4545463

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center