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Duke_DnaseSeq_SK-N-SH

Identifiers
BioSample: SAMN01730106; SRA: SRS365503; GEO: GSM1008585
Organism
Homo sapiens (human)
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo
Attributes
source nameSK-N-SH
biomaterial providerATCC
cell lineectoderm
biomaterial_typeimmortalized cell line
datatypeDnaseSeq
datatype descriptionDNaseI HS Sequencing
labversionbaseAlignCounts.pl v 1,p-value cutoff: 0.05,fseq v 1.84, iff_generic_female
replicate1,2
lineSK-N-SH
cell organismhuman
cell descriptionneuroblastoma, newly promoted to tier 2: not in 2011 analysis, the SK-N-SH line was established from a neuroblastoma in a 4 year old individual.
cell karyotypecancer
cell sexF
labversionbaseAlignCounts.pl v 1
Links
GEO Sample GSM1008585
BioProjects
PRJNA267243 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Retrieve all samples from this project

PRJNA63443 Homo sapiens
Retrieve all samples from this project

Submission
ENCODE DCC, ENCODE DCC; 2012-09-25
Accession:
SAMN01730106
ID:
1730106

BioProject SRA GEO DataSets

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