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CSHL_RnaSeq_K562_cytosol_TAP-Only_shortTotal

Identifiers
BioSample: SAMN00829028; SRA: SRS301482; GEO: GSM605629
Organism
Homo sapiens (human)
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo
Attributes
source nameK562
biomaterial providerATCC
datatypeRnaSeq
datatype descriptionSequencing analysis of RNA expression
rnaextractshortTotal
rnaextract descriptionRna shorter than 200 nt that has not been seperated based on Poly Adenalyation
biorepgen0142C,001C,002C,001C,002C
labexpidLID10571,crg-36,LID10572,LID10572,LID10571
labversionProduced by Hannon Lab,iIDR
readtype1x36
readtype descriptionSingle 36 nt reads
replicate1,2
localizationcytosol
localization descriptionThe fluid between the cells outer membrane and the nucleus
protocolTAP-Only
protocol descriptionThis kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.
rnaextractshortTotal
rnaextract descriptionRna shorter than 200 nt that has not been seperated based on Poly Adenalyation
biorep001C
labexpidLID10572
readtype1x36
readtype descriptionSingle 36 nt reads
replicate1
Links
GEO Sample GSM605629
Submission
ENCODE DCC, ENCODE DCC; 2012-03-19
Accession:
SAMN00829028
ID:
829028

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