RUG30386

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Result Filters

Organism: uncultured Lachnospiraceae bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; environmental samples

Attributes

collection date	not collected
broad-scale environmental context	Ruminant
local-scale environmental context	Rumen
environmental medium	Rumen contents
geographic location	United Kingdom
investigation type	metagenome
isolation source	metagenome
project name	PRJEB34458
sample name	Rumen_Coassembly_mag_962
ENA first public	2021-02-12
ENA last update	2021-02-11
ENA-CHECKLIST	ERC000047
External Id	SAMEA8030495
INSDC center alias	THE ROSLIN INSTITUTE
INSDC center name	THE ROSLIN INSTITUTE
INSDC first public	2021-02-12T17:28:52Z
INSDC last update	2021-02-11T16:06:19Z
INSDC status	public
Submitter Id	Rumen_Coassembly_mag_962
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	Megahit
binning parameters	-v -m 2000
binning software	Metabat2
common name	uncultured Lachnospiraceae bacterium
completeness score	92.9
completeness software	CheckM
contamination score	0.02
geographic location (latitude)	57.0607
geographic location (longitude)	-3.6066
metagenomic source	Artiodactyla
sample derived from	ERS5055282
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a metagenome assembled genome from the metagenomic sample ERS5055282

BioProject: PRJEB34458 Metagenomic sequencing of the rumen of 4 ruminant species
Retrieve all samples from this project

RUG30386
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wj29d08.x1 NCI_CGAP_Kid12 Homo sapiens cDNA clone IMAGE:2404239 3', mRNA sequenc...
wj29d08.x1 NCI_CGAP_Kid12 Homo sapiens cDNA clone IMAGE:2404239 3', mRNA sequence
gi|5444675|gnl|dbEST|2911957|gb|AI8 .1|

Nucleotide

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