RUG30210

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: Paludibacteraceae bacterium
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Paludibacteraceae; unclassified Paludibacteraceae

Attributes

collection date	not collected
broad-scale environmental context	Rangifer tarandus
local-scale environmental context	Rumen
environmental medium	Rumen contents
geographic location	Finland
investigation type	metagenome
isolation source	metagenome
project name	PRJEB34458
sample name	Reindeer_1_mag_115
ENA first public	2021-02-12
ENA last update	2021-02-11
ENA-CHECKLIST	ERC000047
External Id	SAMEA8030319
INSDC center alias	THE ROSLIN INSTITUTE
INSDC center name	THE ROSLIN INSTITUTE
INSDC first public	2021-02-12T17:28:52Z
INSDC last update	2021-02-11T16:06:15Z
INSDC status	public
Submitter Id	Reindeer_1_mag_115
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	IDBA-UD
binning parameters	-v -m 2000
binning software	Metabat2
common name	Paludibacteraceae bacterium
completeness score	82.76
completeness software	CheckM
contamination score	0
geographic location (latitude)	67.9222
geographic location (longitude)	26.5046
metagenomic source	Rangifer tarandus
sample derived from	ERS3750160
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach