RUG30007

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Result Filters

Organism: uncultured Selenomonas sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Negativicutes; Selenomonadales; Selenomonadaceae; Selenomonas; environmental samples

Attributes

collection date	not collected
broad-scale environmental context	Ovis aries
local-scale environmental context	Rumen
environmental medium	Rumen contents
geographic location	New Zealand
investigation type	metagenome
isolation source	metagenome
project name	PRJEB34458
sample name	Sheep_1_mag_32
ENA first public	2021-02-12
ENA last update	2021-02-11
ENA-CHECKLIST	ERC000047
External Id	SAMEA8030116
INSDC center alias	THE ROSLIN INSTITUTE
INSDC center name	THE ROSLIN INSTITUTE
INSDC first public	2021-02-12T17:28:52Z
INSDC last update	2021-02-11T16:06:11Z
INSDC status	public
Submitter Id	Sheep_1_mag_32
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	IDBA-UD
binning parameters	-v -m 2000
binning software	Metabat2
common name	uncultured Selenomonas sp.
completeness score	89.52
completeness software	CheckM
contamination score	0.47
geographic location (latitude)	-45.484
geographic location (longitude)	170.7153
metagenomic source	Ovis aries
sample derived from	ERS3750154
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a metagenome assembled genome from the metagenomic sample ERS3750154

BioProject: PRJEB34458 Metagenomic sequencing of the rumen of 4 ruminant species
Retrieve all samples from this project

RUG30007
RUG30007

biosample
RUG30004
RUG30004

biosample
Nerita atramentosa isolate 07_23_07_T1 voucher AMS:C.269935.002 cytochrome c oxi...
Nerita atramentosa isolate 07_23_07_T1 voucher AMS:C.269935.002 cytochrome c oxidase subunit I (COX1) gene, partial cds; mitochondrial
gi|2421824433|gb|OQ194189.1|

Nucleotide
Austrolittorina unifasciata strain RB1 cytochrome oxidase subunit I (COI) gene, ...
Austrolittorina unifasciata strain RB1 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial
gi|114053950|gb|DQ836997.1|

Nucleotide
lamin isoform K [Homo sapiens]
lamin isoform K [Homo sapiens]
gi|2244985384|ref|NP_001393922.1|

Protein

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