Metagenome-Assembled Genome (MAG)

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Result Filters

Organism: uncultured Collinsella sp.
cellular organisms; Bacteria; Bacillati; Actinomycetota; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples

Attributes

collection date	not provided
broad-scale environmental context	human-associated habitat
local-scale environmental context	human gut
environmental medium	faeces
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	human gut
project name	Human gut MAGs
sample name	SRR2912785-bin.1
ENA first public	2021-01-23
ENA last update	2021-01-21
ENA-CHECKLIST	ERC000047
External Id	SAMEA7847896
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2021-01-23T04:12:03Z
INSDC last update	2021-01-21T23:14:10Z
INSDC status	public
Submitter Id	SRR2912785-bin.1
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	spades_v3.11.1
binning parameters	default
binning software	MetaWRAP v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	93.54
completeness software	CheckM v1.0.11
contamination score	2.69
geographic location (latitude)	not provided
geographic location (longitude)	not provided
metagenomic source	human gut metagenome
sample derived from	SRS1158730
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a MAG from the metagenomic run SRR2912785

BioProject: PRJEB37358 Uncultured novel prokaryotic genomes associated with metabolic diseases such as T2D and T2D-related comorbidities
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