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Metagenome-Assembled Genome (MAG)

Identifiers
BioSample: SAMEA7847263; SRA: ERS5594427
Organism
uncultured Collinsella sp.
cellular organisms; Bacteria; Bacillati; Actinomycetota; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples
Attributes
collection datenot provided
broad-scale environmental contexthuman-associated habitat
local-scale environmental contexthuman gut
environmental mediumfaeces
geographic locationSweden
investigation typemetagenome-assembled genome
isolation sourcehuman gut
project nameHuman gut MAGs
sample nameERR275252-bin.28
ENA first public2021-01-22
ENA last update2021-01-21
ENA-CHECKLISTERC000047
External IdSAMEA7847263
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2021-01-22T04:11:13Z
INSDC last update2021-01-21T23:06:28Z
INSDC statuspublic
Submitter IdERR275252-bin.28
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades_v3.13.0
binning parametersdefault
binning softwareMetaWRAP v1.1
broker nameEMG broker account, EMBL-EBI
completeness score99.19
completeness softwareCheckM v1.0.11
contamination score1.61
geographic location (latitude)not provided
geographic location (longitude)not provided
metagenomic sourcehuman gut metagenome
sample derived fromERS235577
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
Description

This sample represents a MAG from the metagenomic run ERR275252

BioProject
PRJEB37358 Uncultured novel prokaryotic genomes associated with metabolic diseases such as T2D and T2D-related comorbidities
Retrieve all samples from this project

Submission
EBI; 2021-01-27
Accession:
SAMEA7847263
ID:
17603778

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