U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Metagenome-Assembled Genome (MAG)

Identifiers
BioSample: SAMEA7847250; SRA: ERS5594414
Organism
Akkermansia muciniphila
cellular organisms; Bacteria; PVC group; Verrucomicrobiota; Verrucomicrobiia; Verrucomicrobiales; Akkermansiaceae; Akkermansia
Attributes
collection datenot provided
broad-scale environmental contexthuman-associated habitat
local-scale environmental contexthuman gut
environmental mediumfaeces
geographic locationSweden
investigation typemetagenome-assembled genome
isolation sourcehuman gut
project nameHuman gut MAGs
sample nameERR260257-bin.6
ENA first public2021-01-23
ENA last update2021-01-21
ENA-CHECKLISTERC000047
External IdSAMEA7847250
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2021-01-23T04:12:04Z
INSDC last update2021-01-21T23:06:15Z
INSDC statuspublic
Submitter IdERR260257-bin.6
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades_v3.13.0
binning parametersdefault
binning softwareMetaWRAP v1.1
broker nameEMG broker account, EMBL-EBI
completeness score97.92
completeness softwareCheckM v1.0.11
contamination score0.68
geographic location (latitude)not provided
geographic location (longitude)not provided
metagenomic sourcehuman gut metagenome
sample derived fromERS235621
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
Description

This sample represents a MAG from the metagenomic run ERR260257

BioProject
PRJEB37358 Uncultured novel prokaryotic genomes associated with metabolic diseases such as T2D and T2D-related comorbidities
Retrieve all samples from this project

Submission
EBI; 2021-01-27
Accession:
SAMEA7847250
ID:
17603858

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center