Chicken_15_mag_125

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Result Filters

Organism: uncultured Clostridia bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; environmental samples

Attributes

collection date	not collected
broad-scale environmental context	Gallus gallus domesticus
local-scale environmental context	Caeca
environmental medium	Gut contents
geographic location	United Kingdom
investigation type	metagenome
isolation source	metagenome
project name	PRJEB33338
sample name	Chicken_15_mag_125
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-09-09T17:06:41Z
ENA-LAST-UPDATE	2020-08-21T13:42:40Z
External Id	SAMEA7202216
INSDC center name	THE ROSLIN INSTITUTE
INSDC first public	2020-09-09T17:06:41Z
INSDC last update	2020-08-21T13:42:40Z
INSDC status	public
Submitter Id	Chicken_15_mag_125
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	Metabat2
binning parameters	-v -m 2000
binning software	Metabat2
common name	uncultured Clostridia bacterium
completeness score	84.76
completeness software	CheckM
contamination score	2.81
geographic location (latitude)	55.86513
geographic location (longitude)	-3.197356
metagenomic source	Gallus gallus
sample derived from	ERS3558290
scientific_name	uncultured Clostridia bacterium
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	CheckM_markers

Description: This sample represents a metagenome assembled genome from the metagenomic sample ERS3558290

BioProject: PRJEB33338 Metagenomics of chicken cecal contents
Retrieve all samples from this project

Chicken_15_mag_125
Chicken_15_mag_125

biosample
Coassembly_mag_424
Coassembly_mag_424

biosample
Coassembly_mag_502
Coassembly_mag_502

biosample
MULTISPECIES: type I restriction endonuclease subunit R [Bacteroidaceae]
MULTISPECIES: type I restriction endonuclease subunit R [Bacteroidaceae]
gi|492341666|ref|WP_005815643.1|

Protein
amidohydrolase family protein [Bacteroides fragilis]
amidohydrolase family protein [Bacteroides fragilis]
gi|1721882274|ref|WP_146296073.1|

Protein

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