Chicken_12_mag_116

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Result Filters

Organism: uncultured Bacilli bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; environmental samples

Attributes

collection date	not collected
broad-scale environmental context	Gallus gallus domesticus
local-scale environmental context	Caeca
environmental medium	Gut contents
geographic location	United Kingdom
investigation type	metagenome
isolation source	metagenome
project name	PRJEB33338
sample name	Chicken_12_mag_116
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-09-09T17:06:41Z
ENA-LAST-UPDATE	2020-08-21T13:42:39Z
External Id	SAMEA7202156
INSDC center name	THE ROSLIN INSTITUTE
INSDC first public	2020-09-09T17:06:41Z
INSDC last update	2020-08-21T13:42:39Z
INSDC status	public
Submitter Id	Chicken_12_mag_116
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	Metabat2
binning parameters	-v -m 2000
binning software	Metabat2
common name	uncultured Bacilli bacterium
completeness score	92.7
completeness software	CheckM
contamination score	4.31
geographic location (latitude)	55.86513
geographic location (longitude)	-3.197356
metagenomic source	Gallus gallus
sample derived from	ERS3558287
scientific_name	uncultured Bacilli bacterium
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	CheckM_markers

Description: This sample represents a metagenome assembled genome from the metagenomic sample ERS3558287

BioProject: PRJEB33338 Metagenomics of chicken cecal contents
Retrieve all samples from this project

Chicken_12_mag_116
Chicken_12_mag_116

biosample
Chicken_10_mag_7
Chicken_10_mag_7

biosample
PREDICTED: Homo sapiens coiled-coil domain containing 157 (CCDC157), transcript ...
PREDICTED: Homo sapiens coiled-coil domain containing 157 (CCDC157), transcript variant X12, mRNA
gi|2217339937|ref|XM_011530269.3|

Nucleotide
PREDICTED: Eucalyptus grandis glycogen synthase (LOC104437291), transcript varia...
PREDICTED: Eucalyptus grandis glycogen synthase (LOC104437291), transcript variant X5, mRNA
gi|1973648651|ref|XM_018870930.2|

Nucleotide
Model organism or animal sample from Tachysurus vachellii
Model organism or animal sample from Tachysurus vachellii

biosample

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