Sphingobium bin RBC030

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Result Filters

Organism: uncultured Sphingobium sp.
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium; environmental samples

Attributes

collection date	2010-02-09
broad-scale environmental context	wastewater treatment plant
local-scale environmental context	wastewater treatment plant
environmental medium	biofilm
geographic location	Canada
investigation type	metagenome-assembled genome
isolation source	wastewater biofilm
project name	RBCs
sample name	Sphingobium sp. RBC030
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-04-14T16:28:03Z
ENA-LAST-UPDATE	2020-02-27T20:26:21Z
External Id	SAMEA6595121
INSDC center name	UNIVERSITY OF WATERLOO
INSDC first public	2020-04-14T16:28:03Z
INSDC last update	2020-02-27T20:26:21Z
INSDC status	public
Submitter Id	Sphingobium sp. RBC030
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes
binning parameters	TNF and coverage
binning software	metabat
completeness score	98.2
completeness software	CheckM
contamination score	0.88
geographic location (latitude)	43.524549
geographic location (longitude)	-80.264446
metagenomic source	wastewater metagenome
sample derived from	ERS3016383
scientific_name	uncultured Sphingobium sp.
sequencing method	Illumina HiSeq
taxonomic identity marker	multi marker approach