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Avdat soil crust MAG 78

Identifiers
BioSample: SAMEA6526660; SRA: ERS4291065
Organism
uncultured Rubrobacteraceae bacterium
cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Rubrobacteria; Rubrobacterales; Rubrobacteraceae; environmental samples
Attributes
collection date2017-06
broad-scale environmental contextsubtropical desert biome
local-scale environmental contextsoil biocrust
environmental mediumsoil biocrust
geographic locationIsrael
investigation typemetagenome-assembled genome
isolation sourceBiological soil crust from Avdat LTER, Negev Desert, Israel
project namePRJEB36534
sample nameAVDCRST_MAG78
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2020-05-01T17:08:18Z
ENA-LAST-UPDATE2020-02-06T14:13:44Z
External IdSAMEA6526660
INSDC center nameUNIVERSITY OF VIENNA
INSDC first public2020-05-01T17:08:18Z
INSDC last update2020-02-06T14:13:44Z
INSDC statuspublic
Submitter IdAVDCRST_MAG78
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes;kmer set 21,31,41,51,61,71,81,91,101,111,121,127, otherwise default parameters
binning parametersdifferential coverage across 5 samples, 4-mer frequencies
binning softwareMetaBAT v. 2.12.1, MaxBin v. 2.2.4, Metawatt v. 3.5.3 summarized via DASTool v. 1.1.0 and refined in Anvi’O v. 5.2
completeness score90.09
completeness softwareCheckM v.1.0.7
contamination score8.32
geographic location (latitude)30.786
geographic location (longitude)34.767
metagenomic sourcesoil crust metagenome
sample derived fromERS4290255
scientific_nameuncultured Rubrobacteraceae bacterium
sequencing methodIllumina HiSeq 2500
taxonomic identity markerGenome Taxonomy Database classifier (120 protein markers)
Description

This sample represents a MAG from the metagenomic samples ERS4282875,ERS4282876,ERS4282877,ERS4282878,ERS4282879. Binned from assembly ERZ1300053

BioProject
PRJEB36534 Negev crust metagenomes
Retrieve all samples from this project

Submission
EBI; 2020-05-02
Accession:
SAMEA6526660
ID:
14817061

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