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AG-337-I18

Identifiers
BioSample: SAMEA6077932; SRA: ERS3879036
Organism
uncultured Pelagibacteraceae bacterium
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Candidatus Pelagibacterales; Candidatus Pelagibacteraceae; environmental samples
Attributes
WGA amplification approachmda based
collection date2010-11-29
broad-scale environmental contextmarine
local-scale environmental contextmarine layer
environmental mediummarine photic zone
investigation typesingle amplified genome
isolation sourcemarine water
project nameHarnessing the complexity of the marine microbiome through single cell genomics
sample nameAG-337-I18
ENA-CHECKLISTERC000048
ENA-FIRST-PUBLIC2019-10-25T04:04:49Z
ENA-LAST-UPDATE2019-10-14T05:09:10Z
External IdSAMEA6077932
INSDC center nameWOODS HOLE OCEANOGRAPHIC INSTITUTION
INSDC first public2019-10-25T04:04:49Z
INSDC last update2019-10-14T05:09:10Z
INSDC statuspublic
Submitter IdAG-337-I18
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareSPAdes;3,9.0; kmer set 21, 33, 55
completeness score73
completeness softwarecheckM
contamination score0
geographic location (latitude)-26.25
geographic location (longitude)-103.96
metagenomic sourcemarine metagenome
sample derived fromERS3555716
scientific_nameuncultured Pelagibacteraceae bacterium
sequencing methodIllumina
single cell or viral particle lysis approachchemical
sorting technologyflow cytometric cell sorting
taxonomic identity marker16S rRNA gene
Description

SAG AG-337-I18

BioProject
PRJEB33281 GORG-tropics
Retrieve all samples from this project

Submission
EBI; 2019-10-26
Accession:
SAMEA6077932
ID:
13127846

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