Metagenome-Assembled Genome (MAG)

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Result Filters

Organism: uncultured Ruminococcus sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus; environmental samples

Attributes

collection date	not provided
broad-scale environmental context	human-associated habitat
local-scale environmental context	human gut
environmental medium	faeces
geographic location	Spain
investigation type	metagenome-assembled genome
isolation source	human gut
project name	Human gut MAGs
sample name	MAG-GUT74815
ENA-CHECKLIST	ERC000050
ENA-FIRST-PUBLIC	2019-06-05T04:04:10Z
ENA-LAST-UPDATE	2019-03-18T18:40:12Z
External Id	SAMEA5501860
INSDC center name	EBI
INSDC first public	2019-06-05T04:04:10Z
INSDC last update	2019-03-18T18:40:12Z
INSDC status	public
Submitter Id	MAG-GUT74815
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes;3.10.0
binning parameters	default
binning software	MetaBAT v2.12.1
common name	uncultured Ruminococcus sp.
completeness score	92.95
completeness software	CheckM v1.0.7
contamination score	2.46
geographic location (latitude)	40.4637
geographic location (longitude)	-3.7492
metagenomic source	human gut metagenome
sample derived from	SAMN06233224
scientific_name	uncultured Ruminococcus sp.
sequencing method	Illumina
taxonomic identity marker	multi-marker approach