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Human gut MAG #33 derived from sample SRS476270

Identifiers
BioSample: SAMEA5278194; SRA: ERS3085467
Organism
uncultured Clostridium sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium; environmental samples
Attributes
collection date2018-01-01
broad-scale environmental contexthuman gut
local-scale environmental contexthuman-associated habitat
environmental mediumfaeces
geographic locationFiji
investigation typemetagenome-assembled genome
isolation sourcehuman stool
project nameGlobal Human Gut MAGs
sample nameHGM11640
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2019-01-29T17:02:53Z
ENA-LAST-UPDATE2019-01-28T22:39:23Z
External IdSAMEA5278194
INSDC center nameDOE JGI
INSDC first public2019-01-29T17:02:53Z
INSDC last update2019-01-28T22:39:23Z
INSDC statuspublic
Submitter IdHGM11640
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareMegaHIT v1.1.1
binning parametersdefault
binning softwareMaxBin v2.2.4, MetaBAT v2.12.1, CONCOCT v0.4.0, DAS Tool v1.1.0
completeness score98.4
completeness softwareCheckM v1.0.7
contamination score0.27
geographic location (latitude)-16.578193
geographic location (longitude)179.414413
metagenomic source408170
sample derived fromSRS883293
scientific_nameuncultured Clostridium sp.
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
BioProject
PRJEB31003 Global Human Gut MAG (HGM) Dataset
Retrieve all samples from this project

Submission
EBI; 2019-02-01
Accession:
SAMEA5278194
ID:
10858683

BioProject Nucleotide

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