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TARA_20131027T1630Z_210_Combined-EVENTS_CAST_MES_(391m)_SEQ-(100L)_W0.22-3_B110000438

Identifiers
BioSample: SAMEA4398413; SRA: ERS1309862
Organism
marine metagenome
unclassified entries; unclassified sequences; metagenomes; ecological metagenomes
Attributes
depth391
broad-scale environmental contextPolar Biome
local-scale environmental context[MES] marine water layer (ENVO:01000295) within the mesopelagic zone (ENVO:00000213)
environmental mediumwater (ENVO:00002006), including particulate matter (ENVO:01000060) such as planktonic material (ENVO:01000063)
environmental packagewater
project nameTara Oceans Expedition (2009-2013)
sample nameTARA_B110000438
size-fraction lower threshold0.22
size-fraction upper threshold3
temperature4.791395
Chlorophyll Sensor-0.0036
CitationTara Oceans Consortium, Coordinators & Tara Oceans Expedition, Participants. Registry of all samples from the Tara Oceans Expedition (2009-2013). PANGAEA. doi:10.1594/PANGAEA.842197 (2015) (https://dx.doi.org/10.1594/PANGAEA.842197)
ENA first public2019-10-15
ENA last update2016-08-25
ENA-CHECKLISTERC000030
Event Date/Time End2013-10-27T21:38:00
External IdSAMEA4398413
INSDC center aliasGSC
INSDC center nameGenoscope
INSDC first public2019-10-15T04:04:43Z
INSDC last update2016-08-25T12:24:58Z
INSDC statuspublic
Latitude End61.5128
Longitude End-55.9886
Salinity Sensor34.939595
Submitter IdTARA_B110000438
environment (feature) further detailsdiscrete depth around 400 m, within the mesopelagic zone (ENVO:00000213) within the aphotic zone (ENVO:00000210)
event date/time start2013-10-27T16:30:00
event labelTARA_20131027T1630Z_210_Combined-EVENTS_CAST
further detailshttp://store.pangaea.de/Projects/TARA-OCEANS/Logsheets_Wetlab/TARA_20131027Z_210_WETLAB_BACT.pdf
last update date2016-04-23Z
latitude start61.5754
longitude start-55.9846
marine region[AO] Arctic Ocean (MRGID:1906)
nitrate sensor16.017641
oxygen sensor271.8744
protocol descriptionIn the size fraction W0.22-3 micrometres, the sample material was pre-filtered on 3-micrometres, using a 142-mm-diameter Millipore polycarbonate membrane (ref:TSTP14250), and concentrated on 0.22-micrometres, using a 142-mm-diameter Millipore polyethersulfone Express Plus membrane filter (ref:GPWP14250). A volume of 100 Litres was filtered and the 0.22-micrometre-pore-size filter was packaged in a sterile Falcon tube (50 mL), treated with the addition of 10 mL of RNA-Later, labelled with a barcode identification sticker and stored on board in a freezer at -20 degree Celsius. Note 1: Latex or nitril gloves were used for this protocol. Note 2: All containers, filter holders and tubing were washed with 0.1% bleach, rinsed twice with fresh water and rinsed again twice with the pre-filtered sample material. All tweezers are kept clean with ethanol. Note 3: A peristaltic pump (Masterflex, EW-77410-10) was used with a flow rate rendering a pressure of ca. 10-15 psi. Note 4: When the filtration rate decreased considerably, filters were replaced. All filters from one filtration were stored in the same sample container. A total of 2 replicates were prepared and sent for later analysis to the Institute of Marine Science (CSIC), Barcelona, Spain.
protocol labelSEQ-(100L)_W0.22-3
sample collection deviceRosette Vertical Sampling System [RVSS]
sample material labelTARA_210_MES_0.22-3
sample statusThis version can be used to provide data discovery services
sampling campaignTARA_20131020Z
sampling platformSV Tara
sampling stationTARA_210
Description

This sample (TARA_B110000438) was collected at station TARA_210 during campaign TARA_20131020Z of the Tara Oceans expedition (2009-2013), using a Rosette Vertical Sampling System [RVSS]. The sampling event (TARA_20131027T1630Z_210_Combined-EVENTS_CAST) occurred at position latitudeN=61.5754 and longitudeE=-55.9846, on date/time=2013-10-27T16:30:00, at a depth of 382-400 m. The sample material was collected in the marine biome (ENVO:00000447) targeting a [MES] marine water layer (ENVO:01000295) within the mesopelagic zone (ENVO:00000213). The sample material was size-fractionated (0.22-3 micrometres) and prepared on board using protocol [SEQ-(100L)_W0.22-3] for later detection and identification of biological and molecular entities (nucleotides) by sequencing (SEQ) methods. This sample may be used for example in biodiversity and metagenomics studies of prokaryotes. This sample has replicate sample(s): TARA_B110000439.

BioProject
PRJEB9740 BMI. Shotgun Sequencing of Tara Oceans Polar Circle DNA samples corresponding to size fractions for prokaryotes.
Retrieve all samples from this project

Submission
EBI; 2019-10-22
Accession:
SAMEA4398413
ID:
13081625

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