ERS11712853

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Result Filters

Organism: Spirosoma fluviale
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma

Attributes

collection date	2018-04-03
broad-scale environmental context	freshwater lake
local-scale environmental context	lake
environmental medium	fresh water
geographic location	Czech Republic
investigation type	metagenome-assembled genome
isolation source	Freshwater lake
project name	PRJEB52406
sample name	HRS-ES1-bin-366
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-04-13
ENA-LAST-UPDATE	2023-04-13
External Id	SAMEA14434306
INSDC center alias	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center name	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public	2023-04-13T16:27:03Z
INSDC last update	2023-04-13T16:27:03Z
INSDC status	public
Submitter Id	HRS-ES1-bin-366
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	MEGAHIT; kmer set 49,69,89,109,129,149
binning parameters	coverage and kmer
binning software	MetaBAT2
completeness score	43.97
completeness software	checkm
contamination score	0
geographic location (latitude)	48.846361
geographic location (longitude)	14.487639
metagenomic source	freshwater metagenome
sample derived from	ERS11712853
scientific_name	Spirosoma fluviale
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach

Description: Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae

BioProject: PRJEB52406 High Resolution Sampling of Rimov reservoir
Retrieve all samples from this project

MAG: Chitinophaga pinensis isolate HRS-ES2-bin-441, whole genome shotgun sequenc...
MAG: Chitinophaga pinensis isolate HRS-ES2-bin-441, whole genome shotgun sequencing project
gi|2491997812|emb|CALPFM000000000.2 FM020000000

Nucleotide
ERS11712853
ERS11712853

biosample
ERS11712909
ERS11712909

biosample
MAG: Akkermansia muciniphila isolate HRS-HS12-bin-153, whole genome shotgun sequ...
MAG: Akkermansia muciniphila isolate HRS-HS12-bin-153, whole genome shotgun sequencing project
gi|2496032705|emb|CALQAE000000000.2 AE020000000

Nucleotide
MAG: Bifidobacterium breve isolate HRS-ES2-bin-235, whole genome shotgun sequenc...
MAG: Bifidobacterium breve isolate HRS-ES2-bin-235, whole genome shotgun sequencing project
gi|2491892432|emb|CALPEB000000000.2 EB020000000

Nucleotide

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