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ERS11712874

Identifiers
BioSample: SAMEA14433981; SRA: ERS12042633
Organism
Flavobacterium psychrophilum
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium
Attributes
collection date2018-04-23
broad-scale environmental contextfreshwater lake
local-scale environmental contextlake
environmental mediumfresh water
geographic locationCzech Republic
investigation typemetagenome-assembled genome
isolation sourceFreshwater lake
project namePRJEB52406
sample nameHRS-EL9-bin-10
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-04-13
ENA-LAST-UPDATE2023-04-13
External IdSAMEA14433981
INSDC center aliasBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public2023-04-13T16:27:05Z
INSDC last update2023-04-13T16:27:05Z
INSDC statuspublic
Submitter IdHRS-EL9-bin-10
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMEGAHIT; kmer set 49,69,89,109,129,149
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score89.55
completeness softwarecheckm
contamination score0.09
geographic location (latitude)48.846361
geographic location (longitude)14.487639
metagenomic sourcefreshwater metagenome
sample derived fromERS11712874
scientific_nameFlavobacterium psychrophilum
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium

BioProject
PRJEB52406 High Resolution Sampling of Rimov reservoir
Retrieve all samples from this project

Submission
EBI; 2023-04-17
Accession:
SAMEA14433981
ID:
34215980

BioProject Nucleotide

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